PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01164g03020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 257aa    MW: 28035 Da    PI: 4.8745
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01164g03020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.66.7e-162888257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r+R+++++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Peinf101Scf01164g03020.1 28 RSRWNPKPEQILILESIFNSgMVNPPKEETVRIRKVLeqfgAVGDANVFYWFQNRRSRSRR 88
                              89*****************99*************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-9589IPR009057Homeodomain-like
SuperFamilySSF466891.45E-132294IPR009057Homeodomain-like
PROSITE profilePS5007111.372489IPR001356Homeobox domain
SMARTSM003892.6E-62693IPR001356Homeobox domain
PfamPF000461.2E-132888IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEDEAQDHSS SSNSSQSNST PERNEPVRSR WNPKPEQILI LESIFNSGMV NPPKEETVRI  60
RKVLEQFGAV GDANVFYWFQ NRRSRSRRRQ RQIQASQLSV GDQQTRCSTS TGCGAIQFDM  120
INTGPSSSFS SFPMVAAPSN CLALASSSSS SSCGVVGNAN DGLYSFPVQT AGLPEIEQNS  180
SILCSPTDNA NSLHYQLGNT TVYINGVATE VPRGPIDMKA MFGQEDLALY HSSGVPVPVN  240
EYGFILQSLQ QGESYFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609299.11e-107PREDICTED: WUSCHEL-related homeobox 11 isoform X2
SwissprotQ6X7J31e-64WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A061F1794e-81A0A061F179_THECC; WUSCHEL related homeobox 11
STRINGPGSC0003DMT4000695292e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61662231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.14e-34WUSCHEL related homeobox 11